Adapun, rencana proyek pengembangan Kereta Api berdasarkan pagu anggaran tahun 2025, yaitu di Sumatera Utara ada rencana pengembangan Bridge and Railway Improvement Medan-Binjai Route, di Sulawesi Selatan rencana pengembangan Makassar Urban Train.
Sedangkan untuk di wilayah Jabodetabek, terdapat program Jabodetabek Railway Capacity Enhancement Phase I, Tanah Abang Station Improvement Phase I, Construction of Double-Double Track (DDT) for Bekasi-Cikarang, Electrification improvement between Citayam-Nambo, Tenjo Station Upgrade, Duri Station Improvement, Improvement of Transportation Development Rail Based in Jabodetabek, Jakarta Metropolitan Mass Rapid Transit East-West Line Project Phase I.
Sedangkan di wilayah Jawa Barat, terdapat program yang memerlukan dukungan APBN seperti Electrification of Commuter Train Lines Greater Bandung (Padalarang-Cicalengka), Planning and Preparation Construction of the Bandung LRT, Construction of Cimindi Station, Andir, and Ciroyom between Padalarang-Bandung.
Kemudian di wilayah Jawa Timur, yaitu rencana Surabaya Regional Railway Line (Phase I), dan Urban Railway System in Surabaya Metropolitan.